diff --git a/main.go b/main.go
index d98618a..6de3f87 100644
--- a/main.go
+++ b/main.go
@@ -30,9 +30,10 @@ type Config struct {
 }
 
 type Script struct {
-	Path        string
-	Name        string
-	Description string
+	Path    string // Full filesystem path
+	Name    string // Just filename (e.g. "install.sh")
+	RelPath string // Relative path from runs/ (e.g. "tools/install.sh")
+	Desc    string // Description from script comment
 }
 
 var config Config
@@ -225,21 +226,6 @@ func getDescription(scriptPath string) string {
 	return "No description"
 }
 
-func matchesFilters(scriptName string, filters []string) bool {
-	if len(filters) == 0 {
-		return true
-	}
-
-	scriptNameLower := strings.ToLower(scriptName)
-	for _, filter := range filters {
-		filterLower := strings.ToLower(filter)
-		if strings.Contains(scriptName, filter) || strings.Contains(scriptNameLower, filterLower) {
-			return true
-		}
-	}
-	return false
-}
-
 func findScripts(filters []string) ([]Script, error) {
 	var scripts []Script
 
@@ -249,31 +235,72 @@ func findScripts(filters []string) ([]Script, error) {
 		}
 
 		if info.Mode().IsRegular() && (info.Mode()&0o111) != 0 {
+			// Get relative path from runs directory
+			relPath, err := filepath.Rel(config.RunsDir, path)
+			if err != nil {
+				return err
+			}
+
+			// Skip hidden files and directories
+			if strings.HasPrefix(filepath.Base(path), ".") {
+				return nil
+			}
+
 			scriptName := filepath.Base(path)
-			if matchesFilters(scriptName, filters) {
+
+			if len(filters) == 0 || matchesFilters(relPath, scriptName, filters) {
 				scripts = append(scripts, Script{
-					Path:        path,
-					Name:        scriptName,
-					Description: getDescription(path),
+					Path:    path,
+					Name:    scriptName,
+					RelPath: relPath,
+					Desc:    getDescription(path),
 				})
 			}
 		}
 		return nil
 	})
-	if err != nil {
-		return nil, err
-	}
 
 	sort.Slice(scripts, func(i, j int) bool {
-		return scripts[i].Name < scripts[j].Name
+		return scripts[i].RelPath < scripts[j].RelPath
 	})
 
-	return scripts, nil
+	return scripts, err
 }
 
-func executeScript(script Script, verbose bool) error {
+func matchesFilters(relPath, scriptName string, filters []string) bool {
+	for _, filter := range filters {
+		// Normalize paths for comparison (remove .sh extension from filter if present)
+		normalizedFilter := strings.TrimSuffix(filter, ".sh")
+		normalizedRelPath := strings.TrimSuffix(relPath, ".sh")
+		normalizedScriptName := strings.TrimSuffix(scriptName, ".sh")
+
+		// Check exact matches
+		if normalizedRelPath == normalizedFilter || normalizedScriptName == normalizedFilter {
+			return true
+		}
+
+		// Check if filter matches the relative path or script name (case insensitive)
+		filterLower := strings.ToLower(normalizedFilter)
+		relPathLower := strings.ToLower(normalizedRelPath)
+		scriptNameLower := strings.ToLower(normalizedScriptName)
+
+		if strings.Contains(relPathLower, filterLower) || strings.Contains(scriptNameLower, filterLower) {
+			return true
+		}
+
+		// Check directory match (e.g., "tools" matches "tools/install.sh")
+		if strings.HasPrefix(relPathLower, filterLower+"/") {
+			return true
+		}
+	}
+	return false
+}
+
+func executeScript(script Script, args []string, verbose bool) error {
 	logFile := filepath.Join(config.LogsDir, strings.TrimSuffix(script.Name, filepath.Ext(script.Name))+".log")
-	cmd := exec.Command(script.Path)
+
+	// Create command with script path and arguments
+	cmd := exec.Command(script.Path, args...)
 
 	if verbose {
 		logFileHandle, err := os.Create(logFile)
@@ -298,19 +325,40 @@ func executeScript(script Script, verbose bool) error {
 	}
 }
 
-func confirmExecution(scripts []Script) bool {
-	fmt.Printf(Red + "⚠️  About to run ALL scripts:" + NC + "\n")
-	for _, script := range scripts {
-		fmt.Printf("  • %s - %s\n", script.Name, script.Description)
+func createNewScript(scriptName string) error {
+	if err := os.MkdirAll(config.RunsDir, 0o755); err != nil {
+		return err
 	}
-	fmt.Println()
 
-	fmt.Print("Continue? (y/N): ")
-	reader := bufio.NewReader(os.Stdin)
-	answer, _ := reader.ReadString('\n')
-	answer = strings.TrimSpace(strings.ToLower(answer))
+	if !strings.HasSuffix(scriptName, ".sh") {
+		scriptName += ".sh"
+	}
 
-	return answer == "y" || answer == "yes"
+	scriptPath := filepath.Join(config.RunsDir, scriptName)
+
+	if _, err := os.Stat(scriptPath); err == nil {
+		return fmt.Errorf("script %s already exists", scriptName)
+	}
+
+	template := fmt.Sprintf(`#!/usr/bin/env bash
+# NAME: %s script
+
+set -euo pipefail
+
+echo "Running %s script..."
+
+# Add your commands here
+
+echo "✅ %s completed successfully"
+`, strings.TrimSuffix(scriptName, ".sh"), scriptName, strings.TrimSuffix(scriptName, ".sh"))
+
+	err := os.WriteFile(scriptPath, []byte(template), 0o755)
+	if err != nil {
+		return err
+	}
+
+	log("✅ Created script: %s", scriptPath)
+	return nil
 }
 
 func initConfig() {
@@ -337,7 +385,6 @@ echo "Edit this script or add your own to runs/"
 		}
 
 		log("✅ Created runs/ directory with example script")
-		log("Use 'dev ls' to list scripts or 'dev new <name>' to create a new one")
 		return nil
 	}
 	return nil
@@ -346,12 +393,22 @@ echo "Edit this script or add your own to runs/"
 var rootCmd = &cobra.Command{
 	Use:   "dev",
 	Short: "Development script runner",
-	Long:  "A simple tool to manage and run development scripts with security scanning",
+	Long:  "A CLI tool for managing and running development scripts",
+	RunE: func(cmd *cobra.Command, args []string) error {
+		// Default behavior: list scripts if no subcommand
+		return listCmd.RunE(cmd, args)
+	},
 }
 
 var runCmd = &cobra.Command{
-	Use:   "run [filters...]",
+	Use:   "run [filters...] [-- script-args...]",
 	Short: "Run scripts matching filters (or all if no filters)",
+	Long: `Run scripts matching filters. Use -- to pass arguments to scripts.
+
+Examples:
+  dev run tools/dev.sh                    # Run specific script
+  dev run tools/dev.sh -- arg1 arg2       # Run with arguments
+  dev run --verbose install -- --force    # Run with flags`,
 	ValidArgsFunction: func(cmd *cobra.Command, args []string, toComplete string) ([]string, cobra.ShellCompDirective) {
 		scripts, err := findScripts(nil)
 		if err != nil {
@@ -360,14 +417,51 @@ var runCmd = &cobra.Command{
 
 		var completions []string
 		for _, script := range scripts {
-			scriptName := strings.TrimSuffix(script.Name, ".sh")
-			if strings.HasPrefix(scriptName, toComplete) {
-				completions = append(completions, scriptName+"\t"+script.Description)
+			// Add both the script name and relative path as completion options
+			if strings.HasPrefix(script.Name, toComplete) || strings.HasPrefix(script.RelPath, toComplete) {
+				// Use relative path as the completion value with description
+				completions = append(completions, fmt.Sprintf("%s\t%s", script.RelPath, script.Desc))
 			}
 		}
 		return completions, cobra.ShellCompDirectiveNoFileComp
 	},
 	RunE: func(cmd *cobra.Command, args []string) error {
+		// Parse arguments manually to handle -- separator
+		var filters []string
+		var scriptArgs []string
+
+		// Find "run" command position and -- separator in raw args
+		rawArgs := os.Args[1:] // Skip program name
+		runIndex := -1
+		dashDashIndex := -1
+
+		for i, arg := range rawArgs {
+			if arg == "run" {
+				runIndex = i
+			}
+			if arg == "--" && runIndex >= 0 {
+				dashDashIndex = i
+				break
+			}
+		}
+
+		if dashDashIndex >= 0 {
+			// Extract everything between "run" and "--" as filters (skip flags)
+			for i := runIndex + 1; i < dashDashIndex; i++ {
+				arg := rawArgs[i]
+				// Skip flags
+				if !strings.HasPrefix(arg, "-") {
+					filters = append(filters, arg)
+				}
+			}
+			// Everything after "--" are script args
+			scriptArgs = rawArgs[dashDashIndex+1:]
+		} else {
+			// No --, use cobra's args as filters
+			filters = args
+			scriptArgs = []string{}
+		}
+
 		if err := ensureRunsDir(); err != nil {
 			return err
 		}
@@ -376,68 +470,88 @@ var runCmd = &cobra.Command{
 			return err
 		}
 
-		scripts, err := findScripts(args)
+		scripts, err := findScripts(filters)
 		if err != nil {
 			return err
 		}
 
 		if len(scripts) == 0 {
-			if len(args) > 0 {
-				warn("No scripts match the given filters: %s", strings.Join(args, ", "))
-				fmt.Println("Use 'dev ls' to see all available scripts")
+			if len(filters) > 0 {
+				warn("No scripts match filters: %s", strings.Join(filters, ", "))
 			} else {
-				warn("No executable scripts found in %s", config.RunsDir)
-				fmt.Println("Use 'dev new <name>' to create a new script")
+				warn("No scripts found. Use 'dev new <n>' to create one")
 			}
 			return nil
 		}
 
-		if len(args) == 0 && !config.DryRun {
-			if !confirmExecution(scripts) {
-				fmt.Println("Cancelled")
-				return nil
-			}
-		}
-
-		var executed, failed []string
-
+		// CLI execution
 		for _, script := range scripts {
 			if config.DryRun {
-				fmt.Printf(Blue+"[DRY]"+NC+" Would run: %s - %s\n", script.Name, script.Description)
+				argsStr := ""
+				if len(scriptArgs) > 0 {
+					argsStr = fmt.Sprintf(" with args: %s", strings.Join(scriptArgs, " "))
+				}
+				fmt.Printf("[DRY] Would run: %s - %s%s\n", script.RelPath, script.Desc, argsStr)
 				continue
 			}
 
-			fmt.Printf("\n"+Blue+"▶"+NC+" Running: %s\n", script.Name)
-			if script.Description != "No description" {
-				fmt.Printf("  %s\n", script.Description)
+			argsDisplay := ""
+			if len(scriptArgs) > 0 {
+				argsDisplay = fmt.Sprintf(" with args: %s", strings.Join(scriptArgs, " "))
 			}
+			fmt.Printf("Running: %s%s\n", script.RelPath, argsDisplay)
 
-			if err := executeScript(script, config.Verbose); err != nil {
-				errorLog("❌ %s failed (see %s)", script.Name,
-					filepath.Join(config.LogsDir, strings.TrimSuffix(script.Name, filepath.Ext(script.Name))+".log"))
-				failed = append(failed, script.Name)
-			} else {
-				log("✅ %s completed", script.Name)
-				executed = append(executed, script.Name)
-			}
-		}
-
-		if !config.DryRun {
-			fmt.Printf("\n" + Blue + "═══ SUMMARY ═══" + NC + "\n")
-			fmt.Printf("✅ Completed: %d\n", len(executed))
-			if len(failed) > 0 {
-				fmt.Printf("❌ Failed: %d\n", len(failed))
-				fmt.Printf("\n" + Red + "Failed scripts:" + NC + "\n")
-				for _, f := range failed {
-					fmt.Printf("  • %s\n", f)
+			if err := executeScript(script, scriptArgs, config.Verbose); err != nil {
+				errorLog("❌ %s failed", script.RelPath)
+				if !config.Verbose {
+					fmt.Printf("   Check log: %s\n", filepath.Join(config.LogsDir, strings.TrimSuffix(script.Name, filepath.Ext(script.Name))+".log"))
 				}
-				return fmt.Errorf("some scripts failed")
+			} else {
+				log("✅ %s completed", script.RelPath)
 			}
 		}
 		return nil
 	},
 }
 
+var listCmd = &cobra.Command{
+	Use:     "ls",
+	Aliases: []string{"list"},
+	Short:   "List all available scripts",
+	RunE: func(cmd *cobra.Command, args []string) error {
+		if err := ensureRunsDir(); err != nil {
+			return err
+		}
+
+		scripts, err := findScripts(nil)
+		if err != nil {
+			return err
+		}
+
+		if len(scripts) == 0 {
+			warn("No scripts found in %s", config.RunsDir)
+			fmt.Println("Use 'dev new <n>' to create a new script")
+			return nil
+		}
+
+		fmt.Printf("Available scripts in %s:\n\n", config.RunsDir)
+		for _, script := range scripts {
+			fmt.Printf("  %s%s%s - %s\n", Blue, script.RelPath, NC, script.Desc)
+		}
+		fmt.Printf("\nTotal: %d scripts\n", len(scripts))
+		return nil
+	},
+}
+
+var newCmd = &cobra.Command{
+	Use:   "new <n>",
+	Short: "Create a new script template",
+	Args:  cobra.ExactArgs(1),
+	RunE: func(cmd *cobra.Command, args []string) error {
+		return createNewScript(args[0])
+	},
+}
+
 var pushCmd = &cobra.Command{
 	Use:     "push",
 	Aliases: []string{"u", "ush"},
@@ -447,73 +561,6 @@ var pushCmd = &cobra.Command{
 	},
 }
 
-var listCmd = &cobra.Command{
-	Use:     "ls",
-	Aliases: []string{"list"},
-	Short:   "List all available scripts",
-	RunE: func(cmd *cobra.Command, args []string) error {
-		scripts, err := findScripts(nil)
-		if err != nil {
-			return err
-		}
-
-		if len(scripts) == 0 {
-			warn("No executable scripts found in %s", config.RunsDir)
-			return nil
-		}
-
-		fmt.Printf(Blue + "Available scripts:" + NC + "\n")
-		for _, script := range scripts {
-			fmt.Printf("  %s%s%s - %s\n", Green, script.Name, NC, script.Description)
-		}
-		fmt.Printf("\nTotal: %d scripts\n", len(scripts))
-		return nil
-	},
-}
-
-var newCmd = &cobra.Command{
-	Use:   "new <name>",
-	Short: "Create a new script template",
-	Args:  cobra.ExactArgs(1),
-	RunE: func(cmd *cobra.Command, args []string) error {
-		scriptName := args[0]
-
-		if err := os.MkdirAll(config.RunsDir, 0o755); err != nil {
-			return err
-		}
-
-		if !strings.HasSuffix(scriptName, ".sh") {
-			scriptName += ".sh"
-		}
-
-		scriptPath := filepath.Join(config.RunsDir, scriptName)
-
-		if _, err := os.Stat(scriptPath); err == nil {
-			return fmt.Errorf("script %s already exists", scriptName)
-		}
-
-		template := fmt.Sprintf(`#!/usr/bin/env bash
-# NAME: %s script
-
-set -euo pipefail
-
-echo "Running %s script..."
-
-# Add your commands here
-
-echo "✅ %s completed successfully"
-`, strings.TrimSuffix(scriptName, ".sh"), scriptName, strings.TrimSuffix(scriptName, ".sh"))
-
-		if err := os.WriteFile(scriptPath, []byte(template), 0o755); err != nil {
-			return err
-		}
-
-		log("✅ Created new script: %s", scriptPath)
-		log("Edit the script to add your commands")
-		return nil
-	},
-}
-
 var completionCmd = &cobra.Command{
 	Use:   "completion [bash|zsh|fish|powershell]",
 	Short: "Generate completion script",
@@ -537,19 +584,6 @@ Zsh:
   $ dev completion zsh > "${fpath[1]}/_dev"
 
   # You will need to start a new shell for this setup to take effect.
-
-Fish:
-  $ dev completion fish | source
-
-  # To load completions for each session, execute once:
-  $ dev completion fish > ~/.config/fish/completions/dev.fish
-
-PowerShell:
-  PS> dev completion powershell | Out-String | Invoke-Expression
-
-  # To load completions for every new session, run:
-  PS> dev completion powershell > dev.ps1
-  # and source this file from your PowerShell profile.
 `,
 	DisableFlagsInUseLine: true,
 	ValidArgs:             []string{"bash", "zsh", "fish", "powershell"},
@@ -569,22 +603,16 @@ PowerShell:
 	},
 }
 
-var depsCmd = &cobra.Command{
-	Use:     "deps",
-	Aliases: []string{"check"},
-	Short:   "Check for required dependencies",
-	RunE: func(cmd *cobra.Command, args []string) error {
-		return checkDependencies()
-	},
-}
-
 func main() {
 	initConfig()
 
 	runCmd.Flags().BoolVar(&config.DryRun, "dry", false, "Show what would run without executing")
-	runCmd.Flags().BoolVarP(&config.Verbose, "verbose", "v", false, "Show detailed output during execution")
+	runCmd.Flags().BoolVarP(&config.Verbose, "verbose", "v", false, "Show script output in terminal")
 
-	rootCmd.AddCommand(runCmd, pushCmd, listCmd, newCmd, depsCmd, completionCmd)
+	// This prevents Cobra from consuming -- and everything after it
+	runCmd.Flags().SetInterspersed(false)
+
+	rootCmd.AddCommand(runCmd, listCmd, newCmd, pushCmd, completionCmd)
 
 	if err := rootCmd.Execute(); err != nil {
 		os.Exit(1)
diff --git a/runs/tools/dev.sh b/runs/tools/dev.sh
new file mode 100755
index 0000000..3954e4a
--- /dev/null
+++ b/runs/tools/dev.sh
@@ -0,0 +1,10 @@
+#!/usr/bin/env bash
+# NAME: tools/dev script
+
+echo "Running tools/dev.sh script..."
+
+echo $1 $2 $3
+
+# Add your commands here
+
+echo "✅ tools/dev completed successfully"